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GlossarySkin Transcriptome

complete set of RNA molecules produced in skin cells

The skin transcriptome refers to the complete set of RNA molecules, or transcripts, produced in the skin cells. This includes all the genes that are actively being expressed at any given time, providing insights into the skin's functions, responses to environmental factors, and conditions like alopecia. Understanding the skin transcriptome helps researchers and clinicians identify molecular pathways involved in skin health and disease.

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Skin Transcriptome Reveals the Intrinsic Molecular Mechanisms Underlying Hair Follicle Cycling in Cashmere Goats Under Natural and Shortened Photoperiod Conditions

research Skin transcriptome reveals the intrinsic molecular mechanisms underlying hair follicle cycling in Cashmere goats under natural and shortened photoperiod conditions

24 citations , October 2017 in “Scientific reports”

Changing light exposure can affect hair growth timing in goats, possibly due to a key gene, CSDC2.

research Skin transcriptome profiling of Changthangi goats highlights the relevance of genes involved in Pashmina production

22 citations , April 2020 in “Scientific reports”

Changthangi goats have specific genes that help produce Pashmina wool.

research Effect of Nutritional Restriction on the Hair Follicles Development and Skin Transcriptome of Chinese Merino Sheep

19 citations , June 2020 in “Animals”

Poor maternal nutrition can lead to fewer wool follicles in Chinese Merino sheep.

research Preliminary comparison of skin transcriptome from sheep with different wool fibre diameters

5 citations , January 2021 in “Animal Production Science”

Lipid metabolism affects wool fiber diameter in sheep.

research Non-invasive human skin transcriptome analysis using mRNA in skin surface lipids

2 citations , April 2021 in “bioRxiv (Cold Spring Harbor Laboratory)”

The conclusion is that analyzing RNA from skin oils is a promising way to understand skin diseases.

research Skin transcriptomic and selection signature analyses identify ASIP as a key gene in cattle coat color determination

2 citations , April 2025 in “Frontiers in Genetics”

The ASIP gene is crucial for determining cattle coat color.

research Skin transcriptome reveals the Periodic changes in genes underlying hair follicle cycling in Cashmere goats

1 citations , August 2019 in “Research Square (Research Square)”

Cashmere goats have a hair growth cycle with specific genes regulating growth, regression, and resting periods.

research Skin Transcriptome Analysis Identifies the Key Genes Underlying Fur Development in Chinese Tan Sheep in the Birth and Er-mao Periods

May 2020

The FOS gene helps hair growth in Tan sheep.

research Skin transcriptome reveals the periodic changes in genes underlying cashmere (ground hair) follicle transition in Cashmere goats

May 2020 in “Research Square (Research Square)”

The study identified key genes that align with the cashmere growth cycle in goats, which could help improve cashmere production timing.

research Skin transcriptome reveals the periodic changes in genes underlying cashmere (ground hair) follicle transition in Cashmere goats

February 2020 in “Research Square (Research Square)”

The research identified key genes that control the growth cycle of cashmere in goats, which could help improve cashmere goat breeding.

research Skin transcriptome reveals the Periodic changes in genes underlying hair follicle cycling in Cashmere goats

February 2019 in “bioRxiv (Cold Spring Harbor Laboratory)”

Cashmere goat hair growth follows a cycle with distinct growth, regression, and resting periods, influenced by specific genes.

research MSC-EVs and UCB-EVs promote skin wound healing and spatial transcriptome analysis

12 citations , February 2025 in “Scientific Reports”

MSC-EVs and UCB-EVs improve skin wound healing and reduce scarring.

Spatial Transcriptomic Analysis of Imiquimod-Treated Mouse Skin Reveals Deregulation of Lipid Raft-Associated Markers Reversible by Caveolin Scaffolding Domain Peptide

research 1619 Spatial transcriptomic analysis of imiquimod-treated mouse skin reveals deregulation of lipid raft-associated markers which could be reversed by re-introduction of caveolin scaffolding domain peptide

April 2023 in “Journal of Investigative Dermatology”

The research found that a protein called caveolin-1 is reduced in psoriasis, but reintroducing it can help alleviate some psoriasis symptoms.

research Transcriptome Analysis Reveals Skin Lipid Metabolism Related to Wool Diameter in Sheep

10 citations , May 2016 in “bioRxiv (Cold Spring Harbor Laboratory)”

Lipid metabolism affects wool thickness in sheep.

research Transcriptomic Analysis Provides Molecular Insights into Skin Development in Dezhou Donkey Foals

January 2026 in “Veterinary Sciences”

Skin maturation in Dezhou donkey foals involves better barrier function, hair growth, and less collagen production.

research Integrative analysis of Iso-Seq and RNA-seq data reveals transcriptome complexity and differential isoform in skin tissues of different hair length Yak

5 citations , May 2024 in “BMC Genomics”

Different genes affect hair length in yaks.

research An Integrated Transcriptome Atlas of Embryonic Hair Follicle Progenitors, Their Niche, and the Developing Skin

173 citations , August 2015 in “Developmental cell”

The study identified unique genes in hair follicle cells and their environment, suggesting these genes help organize cells for hair growth.

research In Silico Analysis of the Age-Dependent Evolution of the Transcriptome of Mouse Skin Stem Cells

4 citations , January 2020 in “Cells”

The research found that the gene activity in mouse skin stem cells changes significantly as they age.

research Transcriptomic analysis of human skin wound healing and rejuvenation following ablative fractional laser treatment

24 citations , November 2021 in “PLoS ONE”

Ablative fractional laser treatment rejuvenates skin by altering gene expression and promoting wound healing and tissue regeneration.

research Transcriptome-based Selection and Validation of Optimal House-keeping Genes for Skin Research in Goats (Capra hircus)

July 2020

NCBP3, SDHA, and PTPRA are the best genes for normalizing goat skin experiments.

research Transcriptomic Analysis of Human Skin Wound Healing and Rejuvenation Following Ablative Fractional Laser Treatment

1 citations , July 2021 in “bioRxiv (Cold Spring Harbor Laboratory)”

Ablative fractional laser treatment rejuvenates aged skin by activating genes related to wound healing and tissue regeneration.

research 463 Spatial transcriptomics reveals an inflammatory profile in photoexposed light skin, which is absent in dark skin

November 2025 in “Journal of Investigative Dermatology”

Light skin shows more inflammation from sun exposure than dark skin.

research A comparison of transcriptomic patterns measured in the skin of Chinese fine and coarse wool sheep breeds

17 citations , October 2017 in “Scientific reports”

Fine wool sheep have more genes for wool quality, while coarse wool sheep have more for skin and muscle traits.

research De novo assembly and characterization of skin transcriptome using RNAseq in sheep (Ovis aries)

16 citations , January 2015 in “Genetics and Molecular Research”

The research helps improve wool quality and aids human hair research.

research Non-invasive human skin transcriptome analysis using mRNA in skin surface lipids

10 citations , March 2022 in “Communications biology”

A new non-invasive method can analyze skin mRNA to understand skin diseases better.

research Comparative Skin Transcriptomics Reveals Key Regulators of Cashmere Fiber Production in Inner Mongolian Goats

March 2026 in “Animals”

Key genes and pathways influence cashmere production in goats.

Updated Skin Transcriptomic Atlas Depicted by Reciprocal Contribution of Single-Nucleus RNA Sequencing and Single-Cell RNA Sequencing

research 1347 Updated skin transcriptomic atlas depicted by reciprocal contribution of single-nucleus RNA sequencing and single-cell RNA sequencing

April 2023 in “Journal of Investigative Dermatology”

The research updated the skin cell profile, finding new skin cell markers and showing fibroblasts' key role in skin health.

Cross-Comparison of Inflammatory Skin Disease Transcriptomics Identifies PTEN as a Pathogenic Disease Classifier in Cutaneous Lupus Erythematosus

research 1616 Cross-comparison of inflammatory skin disease transcriptomics identifies PTEN as a pathogenic disease classifier in cutaneous lupus erythematosus

April 2023 in “Journal of Investigative Dermatology”

PTEN was identified as a specific marker for the skin disease cutaneous lupus erythematosus, and it helps increase the expression of harmful type I interferons.

research Protocol for preparing mammalian skin samples encompassing hair follicles for spatial transcriptomics

August 2024 in “STAR Protocols”

The document provides a detailed method for analyzing gene expression in skin samples with hair follicles.

research 464 Spatial transcriptomics links gene expression profiles to functional and structural traits of darkly pigmented skin

November 2025 in “Journal of Investigative Dermatology”

Dark skin has stronger barriers and structure due to specific gene activity.